utils: Condense Ewing sarcoma
Condense Ewing Sarcoma with Ewing Sarcoma / PNET due to a inconsistency in data mining.
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utils.R
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utils.R
@ -81,6 +81,9 @@ sma_load_data <- function(file) {
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# At this time only solid tumors are important
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sma <- filter(sma, diagnosis_type == "solid")
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# Condense 'Ewing Sarcom'
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levels(sma$diagnosis)[match("Ewing sarcoma", levels(sma$diagnosis))] <- "Ewing sarcoma / PNET"
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# After filtering unused levels must be cleared from the data
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sma <- droplevels(sma)
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