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coxph

fix-library-load

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• 2f58378a5e Add comparison between sm and non-sm master Jens Sauer 2021-01-22 17:37:34 +01:00
• 10c5d78367 Revert "survival: Add median survial line in sm" Jens Sauer 2021-01-22 12:36:10 +01:00
• 798ebcea99 survival: Add median survial line in sm Jens Sauer 2021-01-22 12:33:23 +01:00
• fb069c4d31 cmprsk: Reduce scale of y axis Jens Sauer 2021-01-22 12:32:18 +01:00
• c012fc65fe plots: Change color palette Jens Sauer 2021-01-18 01:48:28 +01:00
• 63c2883c7e coxph: Adjust for cause-specific analysis Jens Sauer 2021-01-18 01:46:49 +01:00
• ac822f48fa secmal/cmprsk: Fix typo Jens Sauer 2021-01-17 19:04:01 +01:00
• c353208702 secmal/cmprsk: Change scaling to years Jens Sauer 2021-01-17 19:02:33 +01:00
• f29a5f1ef5 secmal: Get risk and CI from competing risk Jens Sauer 2021-01-17 18:53:08 +01:00
• 48be520bb0 secmal: Plot competing risk for SM Jens Sauer 2021-01-17 18:52:06 +01:00
• 471ed09dca secmal: Adjust calculation for SM incidence Jens Sauer 2021-01-17 17:39:34 +01:00
• 388e20673c survival: Add SM survival plot Jens Sauer 2021-01-17 15:27:15 +01:00
• 465ce64487 Add cox time dependend analysis for death and sm Jens Sauer 2021-01-17 11:43:34 +01:00
• 00d96d77f2 Add risk.R Jens Sauer 2021-01-17 11:40:53 +01:00
• c74321fa54 Merge branch 'coxph' Jens Sauer 2021-01-17 11:39:38 +01:00
• 82c5e40c8b data: Update data coxph Jens Sauer 2021-01-17 11:37:42 +01:00
• b08320bd3b survival/sma_plot_surv_asct: Adjust output Jens Sauer 2021-01-17 11:36:21 +01:00
• beedddda01 visualize/sma_jitt_dx_year: Adjust output Jens Sauer 2021-01-17 11:35:12 +01:00
• 3e263bb400 utils: Condense Ewing sarcoma Jens Sauer 2021-01-17 11:33:41 +01:00
• b3ef8086ec coxph: Add uni and multivariate analysis Jens Sauer 2021-01-17 11:22:06 +01:00
• a3c816ad64 coxph: Adjust coxph summary output Jens Sauer 2021-01-17 11:21:05 +01:00
• 351b26368d uitils: Remove global data object before reinitializing Jens Sauer 2020-12-21 16:39:24 +01:00
• 9a331a2091 Merge branch 'data-update' into coxph Jens Sauer 2020-12-21 11:20:36 +01:00
• 2460863bcb Merge branch 'data-update' Jens Sauer 2020-12-18 15:41:52 +01:00
• 2db6a44fad data: Use new dataset Jens Sauer 2020-12-18 15:38:47 +01:00
• 79ccaec8fc data: Update to latest dataset Jens Sauer 2020-12-18 15:37:32 +01:00
• aa0024256b data: Reformat data Jens Sauer 2020-12-18 15:36:30 +01:00
• 8f07c45f63 coxph: First commit of coxph models Jens Sauer 2020-11-25 17:26:18 +01:00
• dbfcca9716 Merge branch 'visualize' Jens Sauer 2020-11-19 19:46:44 +01:00
• 3c517431f6 Merge branch 'fix-library-load' Jens Sauer 2020-11-19 19:46:39 +01:00
• 70ed15c2b8 Merge branch 'change-plot' Jens Sauer 2020-11-19 19:46:34 +01:00
• 0be00652e1 Visualize asct per diagnosis per age Jens Sauer 2020-11-19 19:38:11 +01:00
• 066d6cedf4 Visualize asct per diagnosis per year Jens Sauer 2020-11-19 16:12:04 +01:00
• e0faa24f40 Add basic histograms Jens Sauer 2020-11-19 13:20:52 +01:00
• 2175d46379 Change default aspect ratio for graphs Jens Sauer 2020-11-19 16:20:20 +01:00
• 4762523c20 Add optional width and height arguments save plots Jens Sauer 2020-11-19 16:14:21 +01:00
• 30c03f01d0 Remove unused factor levels from data after limiting Jens Sauer 2020-11-19 13:16:34 +01:00
• d96e3c5ed8 utils: Move library() calls to beginning of file fix-library-load Jens Sauer 2020-11-18 10:26:45 +01:00
• 792b42373e Merge branch 'data' Jens Sauer 2020-11-17 19:50:01 +01:00
• 2a67cecf0a Use data from repository Jens Sauer 2020-11-17 18:28:39 +01:00
• 6d99d0a825 Add data to repository Jens Sauer 2020-11-17 18:26:24 +01:00
• 27942f784a secmal: Fix median survival line warning Jens Sauer 2020-11-17 19:45:18 +01:00
• 6c4f717793 Merge branch 'secmal' Jens Sauer 2020-11-17 18:22:18 +01:00
• 08f9ddfc23 Rename plot_survival.R Jens Sauer 2020-11-17 18:10:13 +01:00
• fcd2d330aa Add secondary malignancy plots Jens Sauer 2020-11-17 18:08:45 +01:00
• 5e7b6007f1 Introduce initialization function Jens Sauer 2020-11-17 17:53:50 +01:00
• a6b5292890 Update README.md Jens Sauer 2020-11-17 18:16:57 +01:00
• 57165dd6d1 Merge branch 'limit-data' Jens Sauer 2020-11-17 15:20:21 +01:00
• 5c26e4100e Merge branch 'plots-per-dx' Jens Sauer 2020-11-17 15:20:15 +01:00
• b81756310b utils: Filter all hematologic patients Jens Sauer 2020-11-17 15:12:58 +01:00
• c68e536861 utils: Filter patient by age Jens Sauer 2020-11-17 15:05:31 +01:00
• 95be046985 survival: Add plots per diagnosis Jens Sauer 2020-11-17 14:33:56 +01:00
• 3c160c37bb Set global break.time.by value for ggsurvplot Jens Sauer 2020-11-17 14:22:38 +01:00
• c087b40f5c Merge branch 'survminer' Jens Sauer 2020-11-17 14:04:07 +01:00
• c0c890c78c survival: Improve plots Jens Sauer 2020-11-17 13:28:06 +01:00
• 12ffcd4e38 survival: Change plot function to ggsurvplot Jens Sauer 2020-11-16 23:22:45 +01:00
• b5634b7f8f survival: Remove excessive newlines Jens Sauer 2020-11-16 22:52:14 +01:00
• e1c6279119 Merge branch 'plot-functions' Jens Sauer 2020-11-16 22:49:52 +01:00
• d6a77d6ebf Add plot_survival.R Jens Sauer 2020-11-16 22:40:28 +01:00
• c3fecc1bf0 survival: Create functions for plots Jens Sauer 2020-11-16 22:38:07 +01:00
• 3dce8a4ea6 Merge branch 'load-function' Jens Sauer 2020-11-16 12:40:26 +01:00
• d87d3143c2 README: List tidyverse as used package Jens Sauer 2020-11-16 12:37:41 +01:00
• 27579452c3 survival: Use new data load function Jens Sauer 2020-11-16 12:27:35 +01:00
• f919a31527 utils: Add sma_load_data() Jens Sauer 2020-11-16 12:24:20 +01:00
• fdd17c0c71 Merge branch 'plot-function' Jens Sauer 2020-11-03 16:57:42 +01:00
• 815731cbcf utils: Hide garbage output from dev.off() Jens Sauer 2020-11-03 16:55:29 +01:00
• 439810a544 survival: Replace manual plotting with sma_plot_file Jens Sauer 2020-10-22 18:43:06 +02:00
• a8c4b327a0 Introduce plot to file function Jens Sauer 2020-10-22 18:23:29 +02:00
• fffd300955 .gitignore: Add csv files Jens Sauer 2020-10-22 16:41:51 +02:00
• 42aec82e36 survival: Change scaling to days per year Jens Sauer 2020-10-22 16:38:39 +02:00
• e4cead5e99 First version of survival calculation Jens Sauer 2020-09-03 16:39:44 +02:00
• 1c778896f0 Add .gitignore Jens Sauer 2020-09-03 16:38:29 +02:00
• 735d67d730 Initial commit Jens Sauer 2020-09-03 11:36:11 +02:00