secMalASCT statistical analysis

How to run

1. Clone the repository
2. Open R and source one of the R files

survival.R

Source this file and call one of the plot functions to show plot in R. sma_plot_file_surv() will save all plots to files.

secmal.R

This file contains the secondary malignancy plots. You can call the functions in R or sma_plot_file_secmal() to save them to files.

plot_survival.R

Special script to generate all plots and save them in files. Run with Rscript plot_survival.R

Dependencies

• git
• R

R packages used

• tidyverse
• survival
• survminer